I am running this on Fedora and Ubuntu is not really an option as I have other items hosted on this server.
I did install it via the Snap package. Update though, once the initial upload of files finished it seems that it went back and got the files it missed due to the exception. I restarted the service (which I did try prior to posting) and the errors no longer showed up. Only ignored files show and other files that I know previously had an issue uploading did upload.
Strange that the issue just went away though.